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Pull requests: DataBiosphere/azul

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Pull requests list

Expose access to mirrored MA files via /repository/files (#7931)
#8028 opened May 15, 2026 by nadove-ucsc Contributor Loading… 100+
1
@hannes-ucsc @nadove-ucsc
3
Fix: DeprecationWarning for datetime methods in Python 3.12 (#5953)
#8023 opened May 13, 2026 by achave11-ucsc Member • Draft 100+
1
@achave11-ucsc @dsotirho-ucsc
3
Promotion 2026-05-12 prod (#8018) 0 reviews [process] Lead didn't request any changes deploy:shared [process] PR requires deploying `shared` component no sandbox [process] PR will not be tested in the sandbox
#8022 opened May 13, 2026 by dsotirho-ucsc Contributor Loading…
38 of 69 tasks
2
@dsotirho-ucsc @nadove-ucsc
2
Promotion 2026-05-12 anvilprod (#8018, #8011) 1 review [process] Lead requested changes once deploy:shared [process] PR requires deploying `shared` component reindex:anvilprod [process] PR requires reindexing anvilprod reindex:partial [process] PR allows for (de)indexing a specific source or catalog sandbox [process] Resolution is being verified in sandbox deployment
#8021 opened May 13, 2026 by dsotirho-ucsc Contributor Loading…
47 of 77 tasks
2
@dsotirho-ucsc
2
Upgrade software dependencies 2026-05-11 (#8014) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component reqs [process] PR includes commit requiring ``make requirements``
#8020 opened May 13, 2026 by dsotirho-ucsc Contributor Loading…
27 of 85 tasks
1
@hannes-ucsc @dsotirho-ucsc
3
Fix: Logs left over from previous incarnation break make deploy (#4532) 0 reviews [process] Lead didn't request any changes no demo [process] Not to be demonstrated at the end of the sprint no sandbox [process] PR will not be tested in the sandbox partial [process] PR is does not completely resolve associated ticket
#8016 opened May 11, 2026 by achave11-ucsc Member Loading… 100+
1
@achave11-ucsc @dsotirho-ucsc
4
Bump urllib3 from 2.6.3 to 2.7.0 dependencies [subject] External software packages that the system depends on python Pull requests that update python code
#8015 opened May 11, 2026 by dependabot Bot Loading…
Bump gitpython from 3.1.48 to 3.1.50 dependencies [subject] External software packages that the system depends on python Pull requests that update python code
#8013 opened May 9, 2026 by dependabot Bot Loading…
@dsotirho-ucsc
Mint and use APAT for file downloads in curl manifest (#8007)
#8010 opened May 8, 2026 by hannes-ucsc Member Loading… 100+
1
@hannes-ucsc
18
Fix: PR CL items missing for upgrade instructions (#7987) 0 reviews [process] Lead didn't request any changes no sandbox [process] PR will not be tested in the sandbox
#8005 opened May 7, 2026 by achave11-ucsc Member Loading… 100+
1
@achave11-ucsc @dsotirho-ucsc
4
Bump pip from 26.0.1 to 26.1 dependencies [subject] External software packages that the system depends on python Pull requests that update python code
#7998 opened May 6, 2026 by dependabot Bot Loading…
@dsotirho-ucsc
Cover query service with mypy (#6821) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7916 opened Apr 8, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
8
Add support for HCA tissue atlas (#7128) 2 reviews [process] Lead requested changes twice reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7877 opened Mar 17, 2026 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
44
Fix: PFB manifest generator uses server-side paging (#7872)
#7873 opened Mar 17, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
14
Fix: Manifest IT fails with pinned seed (#7835)
#7850 opened Mar 10, 2026 by nadove-ucsc Contributor Loading… 100+
1
@nadove-ucsc
7
Use requester-pays for mirroring in AnVIL deployments (#7794)
#7806 opened Feb 25, 2026 by nadove-ucsc Contributor • Draft 100+
2
@nadove-ucsc
14
Fix: OpenSearch queries are huge (azul-private#316) 1 review [process] Lead requested changes once
#7775 opened Feb 12, 2026 by nadove-ucsc Contributor Loading… 100+
@nadove-ucsc
13
Fix: Eliminate uses of requests library (#7633) 1 review [process] Lead requested changes once partial [process] PR is does not completely resolve associated ticket
#7745 opened Feb 4, 2026 by achave11-ucsc Member Loading… 100+
1
@achave11-ucsc
38
OpenSearch queries include many redundant source IDs (#7644)
#7727 opened Jan 29, 2026 by nadove-ucsc Contributor • Draft 100+
1
@nadove-ucsc
1
Fix: Accumulator overflow during aggregation (#6793) 1 review [process] Lead requested changes once API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
47
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc Contributor • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Contributor Loading… 100+
1
@dsotirho-ucsc
107
ProTip! Exclude everything labeled bug with -label:bug.