chore: [hca dcp] clean up unused dev/cc-ma-dev site-configs, relocate makeconfig to ma-dev (#4820)

[frano-m]

Summary

• Delete unused site-config/hca-dcp/{dev,cc-ma-dev,prod}/; promote ma-dev as the canonical HCA dev config and relocate makeConfig there with a new explicit authentication parameter so each env builds its own auth without a wasted call.
• Restructure HCA into entities/{projects,samples,files}/ with a nested entities/projects/entity/tab/* layout for per-tab MA configs; bake the managed-access overlay (warning row + content wrappers) directly into the EXPORT config and getExportMethodMainColumn helper so no runtime overlay function is needed.
• Migrate lungmap off the standalone CategoryConfig exports onto the shared CATEGORY_CONFIG in hca-dcp/ma-dev/categoryGroup/categoryGroupConfig.ts (new site-config/lungmap/dev/categoryGroup/categoryGroupConfig.ts); move lungmap's buildHero to its own viewModelBuilder; repoint CC preview deploy scripts and update the README cellxgene path.

Closes #4820

Test plan

• npm run build-ma-dev:hca-dcp succeeds; sitemap renders all expected routes (verified locally pre-PR).
• npm run build-ma-prod:hca-dcp succeeds.
• npm run build-dev:lungmap succeeds; category facets render in the correct group order (Project, Donor, Sample, Protocol, File) with the expected facet entries.
• npm run build-prod:lungmap succeeds.
• Spot-check HCA dev: project detail tabs (Overview, Metadata, Matrices, Download, Export) render correctly for both an accessible and an inaccessible project; access-warning banner appears where expected.
• Spot-check HCA dev: /export chooser page and each /export/<method> route render with the warning + main + side column layout.
• Spot-check lungmap dev: project detail still renders without MA logic.
• Confirm .gitlab/sites/{dev,prod}/hca/base.yaml build scripts still resolve (build-ma-dev:hca-dcp, build-ma-prod:hca-dcp).

🤖 Generated with Claude Code

[Copilot]

Pull request overview

This PR consolidates and refactors the HCA DCP site configuration by removing deprecated environments, promoting ma-dev/ma-prod as the canonical configs, and reshaping entities/export configuration to bake managed-access layout directly into config (rather than runtime overlays). It also updates LungMAP to consume shared HCA category config and adjusts build/deploy scripts to use the new environment structure.

Changes:

• Removed unused HCA DCP dev/, cc-ma-dev/, and prod/ site-configs and relocated/expanded configuration logic into hca-dcp/ma-dev (including explicit authentication parameterization).
• Restructured HCA entities into entities/{projects,samples,files} and embedded the managed-access warning + main/side layout directly into export and project-detail tab configs.
• Migrated LungMAP category grouping to a shared CATEGORY_CONFIG, moved LungMAP hero view builder, and updated build/deploy scripts + docs to point to the new locations.

Reviewed changes

Copilot reviewed 90 out of 94 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
site-config/lungmap/prod/config.ts	Switch HCA URL imports to hca-dcp/ma-prod.
site-config/lungmap/dev/index/projectsEntityConfig.ts	Update project detail top to use LungMAP-local hero config.
site-config/lungmap/dev/index/common/category.ts	Removed old LungMAP category-group wiring that depended on deleted HCA dev config.
site-config/lungmap/dev/export/exportConfig.ts	Rebuild LungMAP export config using ma-dev export routes/side-column helpers.
site-config/lungmap/dev/detail/project/top.ts	Use LungMAP viewModelBuilder for hero props (decouples from HCA hero builder).
site-config/lungmap/dev/detail/project/projectFilesSideColumn.ts	Point side-column helper import at hca-dcp/ma-dev.
site-config/lungmap/dev/detail/project/metadataSideColumn.ts	Point side-column helper import at hca-dcp/ma-dev.
site-config/lungmap/dev/detail/project/exportSideColumn.ts	Point side-column helper import at hca-dcp/ma-dev.
site-config/lungmap/dev/config.ts	Use shared category-group config and update HCA URL imports.
site-config/lungmap/dev/categoryGroup/categoryGroupConfig.ts	New LungMAP category-group config built from shared HCA CATEGORY_CONFIG.
site-config/hca-dcp/prod/config.ts	Deleted legacy non-managed-access prod config.
site-config/hca-dcp/prod/.env	Deleted legacy non-managed-access prod env file.
site-config/hca-dcp/ma-prod/config.ts	Build prod config via ma-dev makeConfig and set analytics explicitly.
site-config/hca-dcp/ma-prod/authentication/authentication.ts	Replace “mutate existing auth config” with explicit getAuthentication() builder.
site-config/hca-dcp/ma-dev/themeOptions/themeOptions.ts	New ma-dev theme options module extracted from former config.
site-config/hca-dcp/ma-dev/summary/viewModelBuilder.ts	New summary response mapper (including estimated cell count summation).
site-config/hca-dcp/ma-dev/summary/summary.ts	New summary config wrapper for ma-dev.
site-config/hca-dcp/ma-dev/scripts/out/cellxgene-projects.json	Move cellxgene mapping JSON under canonical ma-dev scripts output.
site-config/hca-dcp/ma-dev/scripts/get-cellxgene-projects.ts	Update output path for generated cellxgene mapping.
site-config/hca-dcp/ma-dev/layout/layout.ts	New layout builder extracted into ma-dev/layout.
site-config/hca-dcp/ma-dev/layout/header.ts	New header builder (auth-enabled) extracted into ma-dev/layout.
site-config/hca-dcp/ma-dev/layout/footer.ts	New footer builder extracted into ma-dev/layout.
site-config/hca-dcp/ma-dev/layout/floating.ts	Rename/retarget floating config typing to SiteConfig layout typing.
site-config/hca-dcp/ma-dev/layout/announcements.ts	Rename/retarget announcements typing to SiteConfig header typing.
site-config/hca-dcp/ma-dev/export/sideColumn.ts	New shared export side-column builders (query/summary + policy).
site-config/hca-dcp/ma-dev/export/routes.ts	New canonical export route constants.
site-config/hca-dcp/ma-dev/export/exportMethodMainColumn.ts	New helper to build MA export-method mainColumn including warning + side column wrappers.
site-config/hca-dcp/ma-dev/export/export.ts	Rename/export canonical EXPORT config and bake MA layout directly into export config.
site-config/hca-dcp/ma-dev/export/accessWarning.ts	New reusable export access-warning component config.
site-config/hca-dcp/ma-dev/entities/samples/tableOptions.ts	New extracted samples table options for MA entities structure.
site-config/hca-dcp/ma-dev/entities/samples/samplesEntityConfig.ts	New samples entity config in new entities layout.
site-config/hca-dcp/ma-dev/entities/samples/columns.ts	New extracted samples columns for MA entities structure.
site-config/hca-dcp/ma-dev/entities/projects/ui/ui.ts	New projects UI config module.
site-config/hca-dcp/ma-dev/entities/projects/ui/slots.ts	New projects UI slot wiring for login reminder banner.
site-config/hca-dcp/ma-dev/entities/projects/tableOptions.ts	New extracted projects table options.
site-config/hca-dcp/ma-dev/entities/projects/projectsEntityConfig.ts	New projects entity config in new entities layout.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/top.ts	New MA project detail hero config module.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/projectFilesSideColumn.ts	Update import paths to new export side-column module location.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/projectFilesMainColumn.ts	Fix import paths after entities refactor.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/projectFiles.ts	New MA “Download” tab wrapper including access warning + conditional main/side layout.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/overviewSideColumn.ts	Fix import paths after entities refactor.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/overviewMainColumn.ts	Fix import paths after entities refactor.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/metadataSideColumn.ts	Update import paths to new export side-column module location.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/metadataMainColumn.ts	Fix import paths after entities refactor.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/metadata.ts	New MA “Metadata” tab wrapper including access warning + conditional main/side layout.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/matricesMainColumn.ts	Update import paths to new export side-column module location.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/exportSideColumn.ts	Update import paths to new export side-column module location.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/exportMainColumn.ts	Fix import paths after entities refactor.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/export.ts	New MA “Export” tab wrapper including access warning + conditional main/side layout.
site-config/hca-dcp/ma-dev/entities/projects/entity/tab/accessWarning.ts	New reusable per-project access-warning config for detail tabs.
site-config/hca-dcp/ma-dev/entities/projects/entity/routes.ts	New per-project detail tab route constants.
site-config/hca-dcp/ma-dev/entities/projects/entity/detail.ts	New project detail config pointing at new per-tab modules.
site-config/hca-dcp/ma-dev/entities/projects/columns.ts	New extracted projects columns (including MA-specific columns like Access + DUR).
site-config/hca-dcp/ma-dev/entities/files/tableOptions.ts	New extracted files table options.
site-config/hca-dcp/ma-dev/entities/files/filesEntityConfig.ts	New files entity config in new entities layout.
site-config/hca-dcp/ma-dev/entities/files/columns.ts	New extracted files columns (including DUR).
site-config/hca-dcp/ma-dev/entities/entities.ts	New centralized entities array export for ma-dev.
site-config/hca-dcp/ma-dev/entities/common/ui/ui.ts	New shared entity UI config module.
site-config/hca-dcp/ma-dev/entities/common/ui/slots.ts	New shared entity view slot config (Terra setup form).
site-config/hca-dcp/ma-dev/entities/common/detail/detail.ts	New shared “empty detail” config for non-project entities.
site-config/hca-dcp/ma-dev/config.ts	New canonical HCA makeConfig + env default config; wires category groups, entities, export, layout, theme, summary, status.
site-config/hca-dcp/ma-dev/categoryGroup/utils.ts	New category value mapping helpers for MA-specific category presentation.
site-config/hca-dcp/ma-dev/categoryGroup/categoryGroupConfig.ts	New canonical category config + grouping (including Access + Data Use Restriction).
site-config/hca-dcp/ma-dev/authentication/constants.ts	Adjust authorization endpoint construction.
site-config/hca-dcp/ma-dev/authentication/authentication.ts	Replace “mutate existing auth config” with explicit getAuthentication(dataSourceUrl) builder.
site-config/hca-dcp/dev/ui/entityView.ts	Deleted old shared entity-view slot wiring from deprecated env.
site-config/hca-dcp/dev/index/samplesEntityConfig.ts	Deleted deprecated samples entity config (moved under ma-dev/entities).
site-config/hca-dcp/dev/index/projectsEntityConfig.ts	Deleted deprecated projects entity config (moved under ma-dev/entities).
site-config/hca-dcp/dev/index/filesEntityConfig.ts	Deleted deprecated files entity config (moved under ma-dev/entities).
site-config/hca-dcp/dev/index/common/category.ts	Deleted deprecated category-group config (replaced under ma-dev/categoryGroup).
site-config/hca-dcp/dev/export/constants.ts	Deleted deprecated export route constants (replaced by ma-dev/export/routes).
site-config/hca-dcp/dev/config.ts	Deleted deprecated base config factory (replaced by ma-dev/config.ts).
site-config/hca-dcp/dev/.env	Deleted deprecated env file.
site-config/hca-dcp/cc-ma-dev/ui/projectsEntityList.ts	Deleted deprecated CC managed-access UI overlay.
site-config/hca-dcp/cc-ma-dev/index/projectsEntityConfig.ts	Deleted deprecated managed-access overlay functions (now baked into ma-dev).
site-config/hca-dcp/cc-ma-dev/index/projects/column.ts	Deleted deprecated column overlay.
site-config/hca-dcp/cc-ma-dev/index/filesEntityConfig.ts	Deleted deprecated files overlay.
site-config/hca-dcp/cc-ma-dev/index/common/column.ts	Deleted deprecated shared overlay columns.
site-config/hca-dcp/cc-ma-dev/index/common/category.ts	Deleted deprecated managed-access category overlay.
site-config/hca-dcp/cc-ma-dev/export/export.ts	Deleted deprecated runtime export overlay (now in config).
site-config/hca-dcp/cc-ma-dev/detail/project/top.ts	Deleted deprecated runtime detail-top overlay (now in config).
site-config/hca-dcp/cc-ma-dev/detail/project/mainColumn.ts	Deleted deprecated runtime detail overlay for per-tab MA layout (now in config).
site-config/hca-dcp/cc-ma-dev/config.ts	Deleted deprecated managed-access config wrapper (now in ma-dev/config.ts).
site-config/hca-dcp/cc-ma-dev/authentication/constants.ts	Deleted deprecated CC auth constants.
site-config/hca-dcp/cc-ma-dev/authentication/authentication.ts	Deleted deprecated CC auth builder.
site-config/hca-dcp/cc-ma-dev/.env	Deleted deprecated env file.
README.md	Update documented cellxgene output path to ma-dev.
package.json	Remove deprecated HCA scripts and repoint dev/build scripts + cellxgene script path.
cc-ma-pilot.explore.data.humancellatlas.dev.clevercanary.com-deploy.sh	Update deploy build script to build-ma-dev:hca-dcp.
cc-explore.data.humancellatlas.dev.clevercanary.com-deploy.sh	Update deploy build script to build-ma-dev:hca-dcp.
app/viewModelBuilders/azul/lungmap/common/viewModelBuilders.ts	Add LungMAP hero builder and reuse exported HCA helper functions.
app/viewModelBuilders/azul/hca-dcp/common/viewModelBuilders.ts	Switch export routes to new EXPORT_ROUTE; export getProjectCallToAction; remove generic buildHero.
app/viewModelBuilders/azul/hca-dcp/common/projectMapper/projectEdits/projectEdits.ts	Update cellxgene JSON import path to new ma-dev location.
app/config/config.ts	Remove deleted HCA configs from runtime config registry; keep MA envs only.

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[frano-m]

Thanks for catching this. Good observation, but the mismatch is pre-existing rather than a regression from this PR. On main this script invokes npm run build-dev:hca-dcp, which doesn't exist in package.json — the script was already broken. The PR repointed it to the surviving build-ma-dev:hca-dcp so it actually runs; the UCSC sitemap-domain quirk surfaces only because the script is now functional. cc @NoopDog — happy to handle in a follow-up (either a per-deploy NEXT_PUBLIC_SITEMAP_DOMAIN=... override in the .sh, or a CC-specific site-config env) if you'd like, but flagging that this isn't strictly introduced here.

[frano-m]

Same shape as the cc-explore comment: on main this script invokes npm run build-cc-ma-dev:hca-dcp, which also doesn't exist in package.json (the cc-ma-dev config is what this PR deletes). The PR repointed it to build-ma-dev:hca-dcp. The sitemap-domain mismatch you flagged isn't a regression — it just becomes visible now that the script runs. cc @NoopDog for the same call: per-deploy .env override, dedicated site-config, or accept the mismatch since these are CC dev previews.