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Install or Upgrade throwing errors on Mac #2264

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Install or Upgrade throwing errors on Mac#2264
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bugSomething isn't workingeditor/integrationEditor compatibility and CLI integrationwindowsWindows-specific issues

Description

@zakblacki
zakblacki
opened on Sep 20, 2026

Version

codebase-memory-mcp 0.11.0

Platform

macOS (Apple Silicon)

Install channel

GitHub release archive / install.sh / install.ps1

Binary variant

standard

What happened, and what did you expect?

curl -fsSL https://raw.githubusercontent.com/DeusData/codebase-memory-mcp/main/install.sh | bash
codebase-memory-mcp installer
  os:      darwin
  arch:    arm64
  target:  /Users/g-besoin/.local/bin/codebase-memory-mcp

Downloading codebase-memory-mcp-darwin-arm64.tar.gz...
######################################################################## 100.0%
Checksum verified.
Extracting...
Fixing macOS code signing...
Verified candidate: codebase-memory-mcp 0.11.0
codebase-memory-mcp install 0.11.0

Found 18 existing index(es). Keeping them. After install, re-index to pick up this version's improvements:
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-ChatGPT-erafik.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Downloads-miza.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Desktop-refratech.db
  /Users/g-besoin/.cache/codebase-memory-mcp/_config.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-Codex-2026-09-14-files-pasted-by-the-user-these.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Downloads-Errafik_x5f_Demo_x5f_Code_x5f_Dev.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-Codex-2026-09-14-gu.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Desktop-refraapp.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Desktop-padelmind.db
  /Users/g-besoin/.cache/codebase-memory-mcp/miza.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Desktop-shofy.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-Codex-2026-09-13-realtime-voice-chat.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-Codex-2026-09-12-realtime-voice-chat.db
  /Users/g-besoin/.cache/codebase-memory-mcp/workwear.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-Codex-2026-08-31-realtime-voice-chat.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-ChatGPT-bhl.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Desktop-erafik_v2.db
  /Users/g-besoin/.cache/codebase-memory-mcp/Users-g-besoin-Documents-ChatGPT-workwear.db

xattr: /tmp/cbm-install-hZc66A/codebase-memory-mcp: No such xattr: com.apple.quarantine
/tmp/cbm-install-hZc66A/codebase-memory-mcp: replacing existing signature
codebase-memory-mcp 0.11.0
Stopping active CBM sessions and operations for install...
Installed binary -> /Users/g-besoin/.local/bin/codebase-memory-mcp

Detected agents: Claude-Code Codex Gemini-CLI OpenCode KiloCode VS-Code Cursor Kiro Qwen-Code Goose Rovo Dev CLI Pi

Claude Code:
  skills: 1 installed
  agent: /Users/g-besoin/.claude/agents/codebase-memory-scout.md
  agent: /Users/g-besoin/.claude/agents/codebase-memory.md
  agent: /Users/g-besoin/.claude/agents/codebase-memory-auditor.md
  mcp: /Users/g-besoin/.claude.json
  hooks: PreToolUse Grep/Glob/Bash search augmentation + PostToolUse Read coverage (non-blocking)
  hooks: SessionStart (MCP usage reminder on startup/resume/clear/compact)
  hooks: SubagentStart (MCP usage reminder for subagents)
Codex CLI:
error: agent_config agent=Codex CLI op=mcp_install path=/Users/g-besoin/.codex/config.toml (target: regular file, 17864 bytes)
  mcp: /Users/g-besoin/.codex/config.toml
  instructions: /Users/g-besoin/.codex/AGENTS.md (managed activation pointer)
  skill: /Users/g-besoin/.codex/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.codex/agents/codebase-memory-scout.toml
  agent: /Users/g-besoin/.codex/agents/codebase-memory.toml
  agent: /Users/g-besoin/.codex/agents/codebase-memory-auditor.toml
  hooks: SessionStart + SubagentStart (dynamic graph context)
  note: non-managed hooks require /hooks trust; definition changes require re-trust
Gemini CLI:
  mcp: /Users/g-besoin/.gemini/settings.json
  instructions: /Users/g-besoin/.gemini/GEMINI.md
  agent: /Users/g-besoin/.gemini/agents/codebase-memory-scout.md
  agent: /Users/g-besoin/.gemini/agents/codebase-memory.md
  agent: /Users/g-besoin/.gemini/agents/codebase-memory-auditor.md
  hooks: BeforeTool + AfterTool read_file + SessionStart
  subagents: Scout + Verify + Auditor
OpenCode:
error: agent_config agent=OpenCode op=mcp_install path=/Users/g-besoin/.config/opencode/opencode.json (target: regular file, 2729 bytes)
  mcp: /Users/g-besoin/.config/opencode/opencode.json
  instructions: /Users/g-besoin/.config/opencode/AGENTS.md
  skill: /Users/g-besoin/.config/opencode/skills/codebase-memory/SKILL.md (1 installed)
  agent: preserved modified profile /Users/g-besoin/.config/opencode/agents/codebase-memory-scout.md
error: agent_config agent=OpenCode op=agent_install path=/Users/g-besoin/.config/opencode/agents/codebase-memory-scout.md (target: regular file, 1729 bytes)
  agent: preserved modified profile /Users/g-besoin/.config/opencode/agents/codebase-memory.md
error: agent_config agent=OpenCode op=agent_install path=/Users/g-besoin/.config/opencode/agents/codebase-memory.md (target: regular file, 1880 bytes)
  agent: preserved modified profile /Users/g-besoin/.config/opencode/agents/codebase-memory-auditor.md
error: agent_config agent=OpenCode op=agent_install path=/Users/g-besoin/.config/opencode/agents/codebase-memory-auditor.md (target: regular file, 1910 bytes)
  extension: /Users/g-besoin/.config/opencode/plugins/cbm-augment.ts
KiloCode:
  mcp: /Users/g-besoin/.config/kilo/kilo.jsonc
  instructions: /Users/g-besoin/.config/kilo/rules/codebase-memory-mcp.md
  agent: /Users/g-besoin/.config/kilo/agents/codebase-memory-scout.md
  agent: /Users/g-besoin/.config/kilo/agents/codebase-memory.md
  agent: /Users/g-besoin/.config/kilo/agents/codebase-memory-auditor.md
VS Code:
  mcp: /Users/g-besoin/Library/Application Support/Code/User/mcp.json
Cursor:
  mcp: /Users/g-besoin/.cursor/mcp.json
  skill: /Users/g-besoin/.cursor/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.cursor/agents/codebase-memory-scout.md
  agent: /Users/g-besoin/.cursor/agents/codebase-memory.md
  agent: /Users/g-besoin/.cursor/agents/codebase-memory-auditor.md
Kiro:
  mcp: /Users/g-besoin/.kiro/settings/mcp.json
  instructions: /Users/g-besoin/.kiro/steering/codebase-memory.md
  skill: /Users/g-besoin/.kiro/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.kiro/agents/codebase-memory-scout.json
  agent: /Users/g-besoin/.kiro/agents/codebase-memory.json
  agent: /Users/g-besoin/.kiro/agents/codebase-memory-auditor.json
Qwen Code:
  mcp: /Users/g-besoin/.qwen/settings.json
  instructions: /Users/g-besoin/.qwen/QWEN.md
  skill: /Users/g-besoin/.qwen/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.qwen/agents/codebase-memory-scout.md
  agent: /Users/g-besoin/.qwen/agents/codebase-memory.md
  agent: /Users/g-besoin/.qwen/agents/codebase-memory-auditor.md
  hooks: SessionStart + SubagentStart + PostToolUse ReadFile
  skill: /Users/g-besoin/.copilot/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.copilot/agents/codebase-memory-scout.agent.md
  agent: /Users/g-besoin/.copilot/agents/codebase-memory.agent.md
  agent: /Users/g-besoin/.copilot/agents/codebase-memory-auditor.agent.md
  hooks: SessionStart + SubagentStart (dynamic graph context)
Goose:
  mcp: /Users/g-besoin/.config/goose/config.yaml
  instructions: /Users/g-besoin/.config/goose/.goosehints
Rovo Dev CLI:
  mcp: /Users/g-besoin/.rovodev/mcp.json
  instructions: /Users/g-besoin/.rovodev/AGENTS.md
  skill: /Users/g-besoin/.rovodev/skills/codebase-memory/SKILL.md (1 installed)
  agent: /Users/g-besoin/.rovodev/subagents/codebase-memory-scout.md
  agent: /Users/g-besoin/.rovodev/subagents/codebase-memory.md
  agent: /Users/g-besoin/.rovodev/subagents/codebase-memory-auditor.md
Pi:
  instructions: /Users/g-besoin/.pi/agent/AGENTS.md
  skill: /Users/g-besoin/.pi/agent/skills/codebase-memory/SKILL.md (1 installed)
  extension: /Users/g-besoin/.pi/agent/extensions/cbmem.ts
error: one or more agent configurations failed; the published/current executable was kept, and PATH/index cleanup was not attempted
error: activation stopped after one or more agent configuration or cleanup operations failed; the published/current executable was kept, and configuration changes that completed may remain. Please restart your coding-agent sessions after resolving the errors above.

Reproduction

Try to upgrade or use curl -fsSL https://raw.githubusercontent.com/DeusData/codebase-memory-mcp/main/install.sh | bash causing same issue

Logs

Diagnostics trajectory (memory / performance / leak issues)

Project scale (if relevant)

No response

Confirmations

  • I searched existing issues and this is not a duplicate.
  • My reproduction uses shareable code (a dummy snippet or a public OSS repository), not proprietary code.

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