fix(mcp): prune cached projects with missing roots - #2100

fix(mcp): prune cached projects with missing roots#2100

lorenzozanee wants to merge 2 commits into

DeusData:mainDeusData/codebase-memory-mcp:mainfrom

lorenzozanee:fix/prune-inactive-projectslorenzozanee/codebase-memory-mcp:fix/prune-inactive-projectsCopy head branch name to clipboard