class Nigmat:
role = "Biomedical AI Builder"
focus = ["Agentic Research Systems", "Translational Bioinformatics",
"Scientific Developer Tooling"]
currently = "A modular biomedical research-tooling stack"
motto = "Modular over monolithic · research-aware over generic"
domains = {
"research": ["single-cell", "spatial", "imaging", "multi-omics"],
"clinical": ["streaming AI interfaces", "real-world constraints"],
"agents": ["multi-agent orchestration", "publishable automation"],
"data": ["TCGA", "GEO", "public-cohort study design"],
}Turning ambiguous biomedical questions into reproducible analyses, publishable study designs, and research products people actually use.
An autonomous multi-agent system for end-to-end bioinformatics research — my most-starred work.
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🏥 Clinical & Medical Apps
| Project | Description |
|---|---|
| MedInterprint | AI-driven medical interpretation platform |
| diabeta-ai-insight | AI-powered diabetes analytics |
| AI-review-Literature | AI-assisted literature review |
🧬 Bioinformatics & Omics Tooling
| Project | Description |
|---|---|
| rverflow | Resolves R package dependency hell across CRAN/Bioconductor/GitHub |
| Gastric-Cancer-scRNA-seq-Pipeline | Single-cell RNA-seq pipeline (GSE163558) |
| SC-single-cell-analysis-web | Web-based single-cell analysis platform |
🤖 Agent & Developer Infrastructure
| Project | Description |
|---|---|
| Agent-loop | Agent execution loop framework |
| MCP-manager | Auto-management for Model Context Protocol servers |
| pad-to-vibe | Tablet sketches → Claude Code via MCP |
🔬 Experiments & Visual Explorations
| Project | Description |
|---|---|
| comparision-minimax-glm-5.1 | MiniMax M2.7 vs GLM-5.1 deep architectural analysis |
| scicolors | Scientific color-palette toolkit |
| thrombin-comparison | Thrombin structural comparison |
✦ Modular over Monolithic
✦ Research-aware over Generic
✦ Execution-first over Presentation-heavy
✦ Real workflows over Demo-only
