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jnwei
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Apr 30, 2026
| @@ -209,15 +209,39 @@ | |||
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These should be located under <output_dir>/<query_name>/seed_42/*
the full description of the confidence outputs is here https://openfold-3.readthedocs.io/en/latest/inference.html#prediction-outputs-query-seed
sample_ranking is the score that is used to rank the outputs (although the current outputs are not given in order of highest confidence)
At this time though, I wouldn't place a whole lot of store in the confidence outputs.
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Edits to the openfold-> openfe demo notebook to make it better suited to a demo.
Lots of restructuring, so it's best to look at the whole notebook rather than diffs!